[PDF] Python for Bioinformatics Free Download

[message] Brief Description [PDF] Python for Bioinformatics Free Download by Sebastian Bassi | Publisher : Chapman and Hall/CRC | Category :...

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    • Brief Description
      • [PDF] Python for Bioinformatics Free Download by Sebastian Bassi | Publisher : Chapman and Hall/CRC | Category : Computers & Internet | Tags : Biotechnology, Systems, Information, Web Applications, Databases, Html | ISBN-10 : 1584889292 | ISBN-13 : 9781584889298
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      • Python for Bioinformatics by Sebastian Bassi, Publisher : Chapman and Hall/CRC
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    • Complete Book Description
      • Programming knowledge is often necessary for finding a solution to a biological problem. Based on the author’s experience working for an agricultural biotechnology company, Python for Bioinformatics helps scientists solve their biological problems by helping them understand the basics of programming. Requiring no prior knowledge of programming-related concepts, the book focuses on the easy-to-use, yet powerful, Python computer language.

        The book begins with a very basic introduction that teaches the principles of programming. It then introduces the Biopython package, which can be useful in solving life science problems. The next section covers sophisticated tools for bioinformatics, including relational database management systems and XML. The last part illustrates applications with source code, such as sequence manipulation, filtering vector contamination, calculating DNA melting temperature, parsing a genbank file, inferring splicing sites, and more. The appendices provide a wealth of supplementary information, including instructions for installing Python and Biopython and a Python language and style guide.

        By incorporating examples in biology as well as code fragments throughout, the author places a special emphasis on practice, encouraging readers to experiment with the code. He shows how to use Python and the Biopython package for building web applications, genomic annotation, data manipulation, and countless other applications.

        Table of Contents

        Part I: Programming
        Chapter 1: Introduction
        Chapter 2: First Steps with Python
        Chapter 3: Basic Programming: Data Types
        Chapter 4: Programming: Flow Control
        Chapter 5: Dealing with Files
        Chapter 6: Code Modularizing
        Chapter 7: Error Handling
        Chapter 8: Introduction to Object Orienting Programming (OOP)
        Chapter 9: Regular Expressions

        Part II: Biopython
        Chapter 10: Introduction to Biopython

        Part III: Advanced Topics
        Chapter 11: Web Applications
        Chapter 12: XML
        Chapter 13: Python and Databases
        Chapter 14: Collaborative Development: Version Control

        Part IV: Python Recipes with Commented Source Code
        Chapter 15: Sequence Manipulation in Batch
        Chapter 16: Web Application for Filtering Vector Contamination
        Chapter 17: Searching for PCR Primers Using Primer3
        Chapter 18: Calculating Melting Temperature from a Set of Primers
        Chapter 19: Filtering Out Specific Fields from a Genbank File
        Chapter 20: Converting XML BLAST File into HTML
        Chapter 21: Infering Splicing Sites
        Chapter 22: DNA Mutations with Restrictions
        Chapter 23: Web Server for Multiple Alignment
        Chapter 24: Drawing Marker Positions Using Data Stored in a Database

        Appendix A: Python and Biopython Installation
        Appendix B: Selected Papers
        Appendix C: Included DVD: Virtual Machine Installation and Use
        Appendix D: Python Language Reference
        Appendix E: Answers to Odd-Numbered Questions
        Appendix F: Python Style Guide

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    • Book Details
      • Book Name : Python for Bioinformatics

        Edition : 1

        Author : Sebastian Bassi

        Publisher : Chapman and Hall/CRC

        Category : Computers & Internet

        ISBN-10 : 1584889292

        ISBN-13 : 9781584889298

        ASIN : 1584889292

        Pages : 587

        Language : English

        Publish Date : September 30, 2009
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